Examples

Complete, runnable tutorials. Notebooks are committed without outputs: read one here for the steps and code, and run it on a GPU machine with the repository checked out to see the tables and 3D views.

Python API tutorial: Create an Annotated CIF for a pocket conditioned design

Enzyme design tutorial: from a theozyme to hit hunting and diversification

PPI specificity tutorial using a YAML spec file: binders that pick their target

VHH design tutorial: from a target to a set of designed nanobodies