Index A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | T | U | V | W A ACCEPTOR (rfproteina.conditions.HBondEnum attribute) active_metrics() (rfproteina.metrics.MetricManager method) add_cath_condition() (in module rfproteina.transforms.design_task_modifiers) add_hbond_condition() (in module rfproteina.transforms.design_task_modifiers) add_hydrophobic_condition() (in module rfproteina.transforms.design_task_modifiers) add_metal_condition() (in module rfproteina.transforms.design_task_modifiers) add_pication_condition() (in module rfproteina.transforms.design_task_modifiers) add_pistack_condition() (in module rfproteina.transforms.design_task_modifiers) add_rasa_condition() (in module rfproteina.transforms.design_task_modifiers) add_salt_condition() (in module rfproteina.transforms.design_task_modifiers) add_secondary_structure_condition() (in module rfproteina.transforms.design_task_modifiers) aggregate() (rfproteina.metrics.Metric method) aggregate_metrics_from_per_example_df() (in module rfproteina.inference_utils.aggregate_metrics) aggregate_metrics_output() (rfproteina.rewards.RewardModel method) aggregate_sequence_probability_errors() (in module rfproteina.inference_utils.aggregate_metrics) alias_suffix (rfproteina.conditions.SequenceProbability attribute) aliases (rfproteina.conditions.BasePair attribute) (rfproteina.conditions.CathLabel attribute) (rfproteina.conditions.ChainCentroid attribute) (rfproteina.conditions.CoordinateGroup attribute) (rfproteina.conditions.Hotspot attribute) (rfproteina.conditions.HydrogenBond attribute) (rfproteina.conditions.Hydrophobic attribute) (rfproteina.conditions.IndexGroup attribute) (rfproteina.conditions.InternalCoordinate attribute) (rfproteina.conditions.MetalCoordination attribute) (rfproteina.conditions.NucleicSSState attribute) (rfproteina.conditions.PiCation attribute) (rfproteina.conditions.PiStacking attribute) (rfproteina.conditions.Rasa attribute) (rfproteina.conditions.SaltBridge attribute) (rfproteina.conditions.SecondaryStructure attribute) annotate_for_task_selection() (rfproteina.transforms.design_task.BinderHotspotWith3DTarget method) (rfproteina.transforms.design_task.IgFrameworkConditioningTask method) (rfproteina.transforms.design_task.MotifScaffoldTask method) (rfproteina.transforms.design_task.TipAtomActiveSiteTask method) applies_to_tags() (rfproteina.metrics.Metric method) apply_design_task_modifiers() (rfproteina.transforms.design_task.ConditionedDesignTask method) AROMATIC (rfproteina.conditions.PiCationEnum attribute) B BasePair (class in rfproteina.conditions) BasePairEnum (class in rfproteina.conditions) BeamSearchStrategy (class in rfproteina.search) (class in rfproteina.search.beam_search) BinderHotspotWith3DTarget (class in rfproteina.transforms.design_task) BondLengthMetric (class in rfproteina.metrics.design_metrics) BOTH (rfproteina.conditions.HBondEnum attribute) (rfproteina.conditions.PiCationEnum attribute) build_annotated_atom_array_from_condition_spec() (in module rfproteina.inference_utils.condition_spec) BURIED (rfproteina.conditions.RasaEnum attribute) C C_BP (in module rfproteina.conditions) C_CATH (in module rfproteina.conditions) C_CENTROID (in module rfproteina.conditions) C_CRDGRP (in module rfproteina.conditions) C_HB (in module rfproteina.conditions) C_HOT (in module rfproteina.conditions) C_HPHOB (in module rfproteina.conditions) C_IDXGRP (in module rfproteina.conditions) C_INTCRD (in module rfproteina.conditions) C_MCOORD (in module rfproteina.conditions) C_NA_SS_STATE (in module rfproteina.conditions) C_PICATION (in module rfproteina.conditions) C_PISTACK (in module rfproteina.conditions) C_RAS (in module rfproteina.conditions) C_SALT (in module rfproteina.conditions) C_SEC (in module rfproteina.conditions) C_SEQ_PROB_A (in module rfproteina.conditions) C_SEQ_PROB_ALA (in module rfproteina.conditions) C_SEQ_PROB_ARG (in module rfproteina.conditions) C_SEQ_PROB_ASN (in module rfproteina.conditions) C_SEQ_PROB_ASP (in module rfproteina.conditions) C_SEQ_PROB_C (in module rfproteina.conditions) C_SEQ_PROB_CYS (in module rfproteina.conditions) C_SEQ_PROB_DA (in module rfproteina.conditions) C_SEQ_PROB_DC (in module rfproteina.conditions) C_SEQ_PROB_DG (in module rfproteina.conditions) C_SEQ_PROB_DT (in module rfproteina.conditions) C_SEQ_PROB_G (in module rfproteina.conditions) C_SEQ_PROB_GLN (in module rfproteina.conditions) C_SEQ_PROB_GLU (in module rfproteina.conditions) C_SEQ_PROB_GLY (in module rfproteina.conditions) C_SEQ_PROB_HIS (in module rfproteina.conditions) C_SEQ_PROB_ILE (in module rfproteina.conditions) C_SEQ_PROB_LEU (in module rfproteina.conditions) C_SEQ_PROB_LYS (in module rfproteina.conditions) C_SEQ_PROB_MET (in module rfproteina.conditions) C_SEQ_PROB_PHE (in module rfproteina.conditions) C_SEQ_PROB_PRO (in module rfproteina.conditions) C_SEQ_PROB_SER (in module rfproteina.conditions) C_SEQ_PROB_THR (in module rfproteina.conditions) C_SEQ_PROB_TRP (in module rfproteina.conditions) C_SEQ_PROB_TYR (in module rfproteina.conditions) C_SEQ_PROB_U (in module rfproteina.conditions) C_SEQ_PROB_VAL (in module rfproteina.conditions) can_apply() (rfproteina.transforms.design_task.BinderHotspotWith3DTarget method) (rfproteina.transforms.design_task.IgFrameworkConditioningTask method) (rfproteina.transforms.design_task.InverseFoldingTask method) (rfproteina.transforms.design_task.MotifScaffoldTask method) (rfproteina.transforms.design_task.NoMotifABC method) (rfproteina.transforms.design_task.NucleicSecondaryStructureTask method) (rfproteina.transforms.design_task.PartialLigandTask method) (rfproteina.transforms.design_task.ProteinFromDNAContextABC method) (rfproteina.transforms.design_task.TipAtomActiveSiteTask method) (rfproteina.transforms.design_task.TipAtomPartialLigandTask method) (rfproteina.transforms.design_task.TipAtomTask method) CathLabel (class in rfproteina.conditions) CATION (rfproteina.conditions.PiCationEnum attribute) CDR1 (rfproteina.transforms.design_task.IgRegion attribute) CDR2 (rfproteina.transforms.design_task.IgRegion attribute) CDR3 (rfproteina.transforms.design_task.IgRegion attribute) CDR4 (rfproteina.transforms.design_task.IgRegion attribute) ChainCentroid (class in rfproteina.conditions) ClashMetric (class in rfproteina.metrics.design_metrics) compute() (rfproteina.metrics.design_metrics.BondLengthMetric method) (rfproteina.metrics.design_metrics.ClashMetric method) (rfproteina.metrics.design_metrics.SequenceSimilarityToInput method) (rfproteina.metrics.Metric method) (rfproteina.metrics.rasa_metrics.RasaAdherenceMetric method) compute_bond_length_stats() (in module rfproteina.metrics.design_metrics) compute_clash_stats() (in module rfproteina.metrics.design_metrics) compute_from_kwargs() (rfproteina.metrics.Metric method) concatenate_results() (in module rfproteina.inference_utils.aggregate_metrics) ConditionedDesignTask (class in rfproteina.transforms.design_task) configure_metrics() (rfproteina.search.beam_search.BeamSearchStrategy method) (rfproteina.search.BeamSearchStrategy method) (rfproteina.search.SearchStrategy method) CoordinateGroup (class in rfproteina.conditions) COORDINATING (rfproteina.conditions.MetalCoordEnum attribute) D default_annotation() (rfproteina.conditions.BasePair class method) (rfproteina.conditions.CathLabel class method) (rfproteina.conditions.ChainCentroid class method) (rfproteina.conditions.CoordinateGroup class method) (rfproteina.conditions.IndexGroup class method) default_value (rfproteina.conditions.CathLabel attribute) (rfproteina.conditions.ChainCentroid attribute) (rfproteina.conditions.Hotspot attribute) (rfproteina.conditions.HydrogenBond attribute) (rfproteina.conditions.Hydrophobic attribute) (rfproteina.conditions.InternalCoordinate attribute) (rfproteina.conditions.MetalCoordination attribute) (rfproteina.conditions.NucleicSSState attribute) (rfproteina.conditions.PiCation attribute) (rfproteina.conditions.PiStacking attribute) (rfproteina.conditions.Rasa attribute) (rfproteina.conditions.SaltBridge attribute) (rfproteina.conditions.SecondaryStructure attribute) (rfproteina.conditions.SequenceProbability attribute) differentiable (rfproteina.metrics.Metric attribute) diversify_sequence_conditioning() (in module rfproteina.transforms.design_task_modifiers) DONOR (rfproteina.conditions.HBondEnum attribute) dtype (rfproteina.conditions.BasePair attribute) (rfproteina.conditions.CathLabel attribute) (rfproteina.conditions.ChainCentroid attribute) (rfproteina.conditions.CoordinateGroup attribute) (rfproteina.conditions.Hotspot attribute) (rfproteina.conditions.HydrogenBond attribute) (rfproteina.conditions.Hydrophobic attribute) (rfproteina.conditions.IndexGroup attribute) (rfproteina.conditions.InternalCoordinate attribute) (rfproteina.conditions.MetalCoordination attribute) (rfproteina.conditions.NucleicSSState attribute) (rfproteina.conditions.PiCation attribute) (rfproteina.conditions.PiStacking attribute) (rfproteina.conditions.Rasa attribute) (rfproteina.conditions.SaltBridge attribute) (rfproteina.conditions.SecondaryStructure attribute) E ensure_atomized_tokens_are_sequence_conditioned() (rfproteina.transforms.design_task.ConditionedDesignTask method) enum (rfproteina.conditions.BasePair attribute) (rfproteina.conditions.CathLabel attribute) (rfproteina.conditions.ChainCentroid attribute) (rfproteina.conditions.CoordinateGroup attribute) (rfproteina.conditions.Hotspot attribute) (rfproteina.conditions.HydrogenBond attribute) (rfproteina.conditions.Hydrophobic attribute) (rfproteina.conditions.IndexGroup attribute) (rfproteina.conditions.InternalCoordinate attribute) (rfproteina.conditions.MetalCoordination attribute) (rfproteina.conditions.NucleicSSState attribute) (rfproteina.conditions.PiCation attribute) (rfproteina.conditions.PiStacking attribute) (rfproteina.conditions.Rasa attribute) (rfproteina.conditions.SaltBridge attribute) (rfproteina.conditions.SecondaryStructure attribute) EXPOSED (rfproteina.conditions.RasaEnum attribute) F forward() (rfproteina.transforms.design_task.BinderHotspotWith3DTarget method) (rfproteina.transforms.design_task.IgFrameworkConditioningTask method) (rfproteina.transforms.design_task.InverseFoldingTask method) (rfproteina.transforms.design_task.MotifScaffoldTask method) (rfproteina.transforms.design_task.NucleicSecondaryStructureTask method) (rfproteina.transforms.design_task.PartialLigandTask method) (rfproteina.transforms.design_task.ProteinFromDNASequenceContextTask method) (rfproteina.transforms.design_task.ProteinFromDNAStructureContextTask method) (rfproteina.transforms.design_task.StructurePredictionTask method) (rfproteina.transforms.design_task.TipAtomActiveSiteTask method) (rfproteina.transforms.design_task.TipAtomPartialLigandTask method) (rfproteina.transforms.design_task.TipAtomTask method) (rfproteina.transforms.design_task.UnconditionalTask method) FRAMEWORK (rfproteina.transforms.design_task.IgRegion attribute) from_metrics() (rfproteina.metrics.MetricManager class method) full_name (rfproteina.conditions.BasePair attribute) (rfproteina.conditions.CathLabel attribute) (rfproteina.conditions.ChainCentroid attribute) (rfproteina.conditions.CoordinateGroup attribute) (rfproteina.conditions.Hotspot attribute) (rfproteina.conditions.HydrogenBond attribute) (rfproteina.conditions.Hydrophobic attribute) (rfproteina.conditions.IndexGroup attribute) (rfproteina.conditions.InternalCoordinate attribute) (rfproteina.conditions.MetalCoordination attribute) (rfproteina.conditions.NucleicSSState attribute) (rfproteina.conditions.PiCation attribute) (rfproteina.conditions.PiStacking attribute) (rfproteina.conditions.Rasa attribute) (rfproteina.conditions.SaltBridge attribute) (rfproteina.conditions.SecondaryStructure attribute) G generate() (rfproteina.search.beam_search.BeamSearchStrategy method) (rfproteina.search.BeamSearchStrategy method) (rfproteina.search.SearchStrategy method) (rfproteina.search.VanillaStrategy method) get_rasa_metrics() (in module rfproteina.metrics.rasa_metrics) H has_ground_truth (rfproteina.conditions.BasePair attribute) (rfproteina.conditions.CathLabel attribute) (rfproteina.conditions.ChainCentroid attribute) (rfproteina.conditions.CoordinateGroup attribute) (rfproteina.conditions.Hotspot attribute) (rfproteina.conditions.HydrogenBond attribute) (rfproteina.conditions.Hydrophobic attribute) (rfproteina.conditions.IndexGroup attribute) (rfproteina.conditions.InternalCoordinate attribute) (rfproteina.conditions.MetalCoordination attribute) (rfproteina.conditions.NucleicSSState attribute) (rfproteina.conditions.PiCation attribute) (rfproteina.conditions.PiStacking attribute) (rfproteina.conditions.Rasa attribute) (rfproteina.conditions.SaltBridge attribute) (rfproteina.conditions.SecondaryStructure attribute) HBondEnum (class in rfproteina.conditions) Hotspot (class in rfproteina.conditions) HydrogenBond (class in rfproteina.conditions) Hydrophobic (class in rfproteina.conditions) I IgFrameworkConditioningTask (class in rfproteina.transforms.design_task) IgRegion (class in rfproteina.transforms.design_task) IndexGroup (class in rfproteina.conditions) instantiate_from_hydra() (rfproteina.metrics.MetricManager class method) INTERMEDIATE (rfproteina.conditions.RasaEnum attribute) InternalCoordinate (class in rfproteina.conditions) InverseFoldingTask (class in rfproteina.transforms.design_task) is_internal() (rfproteina.conditions.CoordinateGroup class method) is_legacy_dialect() (in module rfproteina.inference_utils.condition_spec) is_symmetric (rfproteina.conditions.BasePair attribute) (rfproteina.conditions.CathLabel attribute) (rfproteina.conditions.ChainCentroid attribute) (rfproteina.conditions.CoordinateGroup attribute) (rfproteina.conditions.Hotspot attribute) (rfproteina.conditions.HydrogenBond attribute) (rfproteina.conditions.Hydrophobic attribute) (rfproteina.conditions.IndexGroup attribute) (rfproteina.conditions.InternalCoordinate attribute) (rfproteina.conditions.MetalCoordination attribute) (rfproteina.conditions.NucleicSSState attribute) (rfproteina.conditions.PiCation attribute) (rfproteina.conditions.PiStacking attribute) (rfproteina.conditions.Rasa attribute) (rfproteina.conditions.SaltBridge attribute) (rfproteina.conditions.SecondaryStructure attribute) K KNOWN_ABSOLUTE_COORDS (rfproteina.conditions.CoordinateGroup attribute) kwargs_to_compute_args (rfproteina.metrics.design_metrics.BondLengthMetric property) (rfproteina.metrics.design_metrics.ClashMetric property) (rfproteina.metrics.design_metrics.SequenceSimilarityToInput property) (rfproteina.metrics.Metric property) (rfproteina.metrics.rasa_metrics.RasaAdherenceMetric property) L level (rfproteina.conditions.BasePair attribute) (rfproteina.conditions.CathLabel attribute) (rfproteina.conditions.ChainCentroid attribute) (rfproteina.conditions.CoordinateGroup attribute) (rfproteina.conditions.Hotspot attribute) (rfproteina.conditions.HydrogenBond attribute) (rfproteina.conditions.Hydrophobic attribute) (rfproteina.conditions.IndexGroup attribute) (rfproteina.conditions.InternalCoordinate attribute) (rfproteina.conditions.MetalCoordination attribute) (rfproteina.conditions.NucleicSSState attribute) (rfproteina.conditions.PiCation attribute) (rfproteina.conditions.PiStacking attribute) (rfproteina.conditions.Rasa attribute) (rfproteina.conditions.SaltBridge attribute) (rfproteina.conditions.SecondaryStructure attribute) load_condition_spec_inputs() (in module rfproteina.inference_utils.condition_spec) load_example_input() (in module rfproteina.inference_utils.condition_spec) load_spec_file() (in module rfproteina.inference_utils.condition_spec) LOOP (rfproteina.conditions.BasePairEnum attribute) M main() (in module rfproteina.inference_utils.aggregate_metrics) mask_from_annotation() (rfproteina.conditions.BasePair class method) (rfproteina.conditions.CathLabel class method) (rfproteina.conditions.ChainCentroid class method) (rfproteina.conditions.CoordinateGroup class method) (rfproteina.conditions.HydrogenBond class method) (rfproteina.conditions.IndexGroup class method) (rfproteina.conditions.InternalCoordinate class method) (rfproteina.conditions.MetalCoordination class method) (rfproteina.conditions.NucleicSSState class method) (rfproteina.conditions.PiCation class method) (rfproteina.conditions.Rasa class method) (rfproteina.conditions.SaltBridge class method) (rfproteina.conditions.SecondaryStructure class method) (rfproteina.conditions.SequenceProbability class method) MAX_GROUP_ID (rfproteina.conditions.CoordinateGroup attribute) METAL (rfproteina.conditions.MetalCoordEnum attribute) MetalCoordEnum (class in rfproteina.conditions) MetalCoordination (class in rfproteina.conditions) Metric (class in rfproteina.metrics) metric_names (rfproteina.search.beam_search.BeamSearchStrategy property) (rfproteina.search.BeamSearchStrategy property) (rfproteina.search.SearchStrategy property) MetricInputError MetricManager (class in rfproteina.metrics) module rfproteina.conditions rfproteina.inference_utils.aggregate_metrics rfproteina.inference_utils.condition_spec rfproteina.metrics rfproteina.metrics.design_metrics rfproteina.metrics.rasa_metrics rfproteina.rewards rfproteina.search rfproteina.search.beam_search rfproteina.transforms.design_task rfproteina.transforms.design_task_modifiers MotifScaffoldTask (class in rfproteina.transforms.design_task) N n_body (rfproteina.conditions.BasePair attribute) (rfproteina.conditions.CathLabel attribute) (rfproteina.conditions.ChainCentroid attribute) (rfproteina.conditions.CoordinateGroup attribute) (rfproteina.conditions.Hotspot attribute) (rfproteina.conditions.HydrogenBond attribute) (rfproteina.conditions.Hydrophobic attribute) (rfproteina.conditions.IndexGroup attribute) (rfproteina.conditions.InternalCoordinate attribute) (rfproteina.conditions.MetalCoordination attribute) (rfproteina.conditions.NucleicSSState attribute) (rfproteina.conditions.PiCation attribute) (rfproteina.conditions.PiStacking attribute) (rfproteina.conditions.Rasa attribute) (rfproteina.conditions.SaltBridge attribute) (rfproteina.conditions.SecondaryStructure attribute) name (rfproteina.conditions.BasePair attribute) (rfproteina.conditions.CathLabel attribute) (rfproteina.conditions.ChainCentroid attribute) (rfproteina.conditions.CoordinateGroup attribute) (rfproteina.conditions.Hotspot attribute) (rfproteina.conditions.HydrogenBond attribute) (rfproteina.conditions.Hydrophobic attribute) (rfproteina.conditions.IndexGroup attribute) (rfproteina.conditions.InternalCoordinate attribute) (rfproteina.conditions.MetalCoordination attribute) (rfproteina.conditions.NucleicSSState attribute) (rfproteina.conditions.PiCation attribute) (rfproteina.conditions.PiStacking attribute) (rfproteina.conditions.Rasa attribute) (rfproteina.conditions.SaltBridge attribute) (rfproteina.conditions.SecondaryStructure attribute) NEGATIVE (rfproteina.conditions.SaltBridgeEnum attribute) NoMotifABC (class in rfproteina.transforms.design_task) NONE (rfproteina.conditions.HBondEnum attribute) (rfproteina.conditions.MetalCoordEnum attribute) (rfproteina.conditions.PiCationEnum attribute) (rfproteina.conditions.SaltBridgeEnum attribute) NOT_IG (rfproteina.transforms.design_task.IgRegion attribute) NucleicSecondaryStructureTask (class in rfproteina.transforms.design_task) NucleicSSState (class in rfproteina.conditions) NULL_VALUE (rfproteina.conditions.CathLabel attribute) O on_validation_epoch_end() (rfproteina.metrics.MetricManager method) on_validation_epoch_start() (rfproteina.metrics.MetricManager method) optional_kwargs (rfproteina.metrics.Metric property) P PAIR (rfproteina.conditions.BasePairEnum attribute) PartialLigandTask (class in rfproteina.transforms.design_task) PiCation (class in rfproteina.conditions) PiCationEnum (class in rfproteina.conditions) PiStacking (class in rfproteina.conditions) POSITIVE (rfproteina.conditions.SaltBridgeEnum attribute) ProteinFromDNAContextABC (class in rfproteina.transforms.design_task) ProteinFromDNASequenceContextTask (class in rfproteina.transforms.design_task) ProteinFromDNAStructureContextTask (class in rfproteina.transforms.design_task) R Rasa (class in rfproteina.conditions) RasaAdherenceMetric (class in rfproteina.metrics.rasa_metrics) RasaEnum (class in rfproteina.conditions) required_compute_args (rfproteina.metrics.Metric property) required_kwargs (rfproteina.metrics.Metric property) resolve_condition_spec_inputs() (in module rfproteina.inference_utils.condition_spec) RewardModel (class in rfproteina.rewards) rfproteina.conditions module rfproteina.inference_utils.aggregate_metrics module rfproteina.inference_utils.condition_spec module rfproteina.metrics module rfproteina.metrics.design_metrics module rfproteina.metrics.rasa_metrics module rfproteina.rewards module rfproteina.search module rfproteina.search.beam_search module rfproteina.transforms.design_task module rfproteina.transforms.design_task_modifiers module S SaltBridge (class in rfproteina.conditions) SaltBridgeEnum (class in rfproteina.conditions) sample_ligand_mask() (rfproteina.transforms.design_task.PartialLigandTask method) sample_mask() (rfproteina.transforms.design_task.MotifScaffoldTask method) (rfproteina.transforms.design_task.TipAtomActiveSiteTask method) (rfproteina.transforms.design_task.TipAtomPartialLigandTask method) (rfproteina.transforms.design_task.TipAtomTask method) sample_motif_mask() (rfproteina.transforms.design_task.NucleicSecondaryStructureTask method) sample_protein_pocket() (rfproteina.transforms.design_task.TipAtomActiveSiteTask method) sample_unindexed_mask() (rfproteina.transforms.design_task.MotifScaffoldTask method) (rfproteina.transforms.design_task.NucleicSecondaryStructureTask method) SearchStrategy (class in rfproteina.search) SecondaryStructure (class in rfproteina.conditions) SequenceProbability (class in rfproteina.conditions) SequenceSimilarityToInput (class in rfproteina.metrics.design_metrics) set_annotation() (rfproteina.conditions.CoordinateGroup class method) set_task_info() (rfproteina.transforms.design_task.NoMotifABC method) (rfproteina.transforms.design_task.ProteinFromDNAContextABC method) setup() (rfproteina.metrics.Metric method) split_global_args() (in module rfproteina.inference_utils.condition_spec) StructurePredictionTask (class in rfproteina.transforms.design_task) subsample_condition_enum() (in module rfproteina.transforms.design_task_modifiers) SUPPORTED_REDUCTIONS (rfproteina.metrics.Metric attribute) T teardown() (rfproteina.metrics.Metric method) TipAtomActiveSiteTask (class in rfproteina.transforms.design_task) TipAtomPartialLigandTask (class in rfproteina.transforms.design_task) TipAtomTask (class in rfproteina.transforms.design_task) token_index (rfproteina.conditions.SequenceProbability attribute) token_name (rfproteina.conditions.SequenceProbability attribute) U UnconditionalTask (class in rfproteina.transforms.design_task) UNKNOWN_COORDS (rfproteina.conditions.CoordinateGroup attribute) UNSPECIFIED (rfproteina.conditions.BasePairEnum attribute) (rfproteina.conditions.RasaEnum attribute) V value_shape (rfproteina.conditions.ChainCentroid attribute) (rfproteina.conditions.InternalCoordinate attribute) VanillaStrategy (class in rfproteina.search) W write_condition_spec_cif() (in module rfproteina.inference_utils.condition_spec)
